SNP Profiles of UF 676 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
1._MITC-000064	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
2._UF_676_Fld#_180_Plt#_2	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
3._RUQ_56	_	_	_	_	_	_	AA	_	_	_	_	_	_	_
4._RUQ_56	_	_	_	_	_	CT	_	_	_	_	AG	_	_	_
5._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
6._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
7._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
8._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
9._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
10._RUQ_56	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
11._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
12._GC-08-080-2-03	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
13._GC-08-080-2-03	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
14._GC-08-080-2-03	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
15._GC-08-080-2-03	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
16._UF_676	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
17._RUQ_56	_	_	_	_	_	CT	_	GT	_	_	AG	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CG	AG	AC	AG
1._MITC-000064	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CG	AG	AC	AG
2._UF_676_Fld#_180_Plt#_2	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CG	AG	AC	AG
3._RUQ_56	_	GT	_	_	_	_	_	_	AC	_	CG	_	_	_
4._RUQ_56	_	_	_	_	_	_	_	CT	AC	_	CG	_	_	CT
5._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
6._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
7._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
8._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
9._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
10._RUQ_56	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
11._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	CG	AG	GT	CT
12._GC-08-080-2-03	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
13._GC-08-080-2-03	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
14._GC-08-080-2-03	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
15._GC-08-080-2-03	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
16._UF_676	_	GT	CC	_	AA	_	TT	_	AC	CT	GG	AG	GT	CT
17._RUQ_56	_	GT	_	CT	_	_	_	CT	AC	CT	CG	AG	GT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
1._MITC-000064	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
2._UF_676_Fld#_180_Plt#_2	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
3._RUQ_56	_	_	_	_	_	AG	_	_	_	_	_	_	AG	_
4._RUQ_56	_	_	AG	AC	CG	AG	_	_	_	_	_	_	_	AG
5._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
6._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
7._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
8._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
9._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
10._RUQ_56	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
11._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
12._GC-08-080-2-03	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
13._GC-08-080-2-03	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
14._GC-08-080-2-03	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
15._GC-08-080-2-03	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
16._UF_676	CT	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_
17._RUQ_56	_	_	AG	AC	CG	AG	_	CT	_	_	_	_	AG	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CC
1._MITC-000064	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CC
2._UF_676_Fld#_180_Plt#_2	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CC
3._RUQ_56	_	_	_	_	_	_	_	_	_	AC	_	_	_	CC
4._RUQ_56	AT	CT	_	_	_	_	CG	_	_	_	_	_	_	CC
5._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
6._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
7._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
8._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
9._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
10._RUQ_56	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
11._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
12._GC-08-080-2-03	AT	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC
13._GC-08-080-2-03	AT	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC
14._GC-08-080-2-03	AT	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC
15._GC-08-080-2-03	AT	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC
16._UF_676	AT	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC
17._RUQ_56	AT	_	_	_	_	_	CG	_	_	CC	_	GT	_	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	AG	GG	AG	AG	AG	AC	AG	AG	AC	AC	AC	AC	CC
1._MITC-000064	AC	AG	GG	AG	AG	AG	AC	AG	AG	AC	AC	AC	AC	CC
2._UF_676_Fld#_180_Plt#_2	AC	AG	GG	AG	AG	AG	AC	AG	AG	AC	AC	AC	AC	CC
3._RUQ_56	AC	_	CC	_	_	_	GT	AG	_	_	_	_	AC	TT
4._RUQ_56	AC	_	CC	_	_	_	_	_	_	GT	_	_	_	_
5._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
6._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
7._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
8._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
9._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
10._RUQ_56	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
11._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
12._GC-08-080-2-03	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
13._GC-08-080-2-03	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
14._GC-08-080-2-03	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
15._GC-08-080-2-03	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	AC	GG
16._UF_676	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
17._RUQ_56	AA	_	CC	CT	_	_	GT	AG	CT	_	_	GT	AC	_

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	CG	GG	GG	AG	AC	AA	GG	AG	AA	AG	AG	X_X	X_X
1._MITC-000064	AG	CG	GG	GG	AG	AC	AA	GG	AG	AA	AG	AG	X_X	X_X
2._UF_676_Fld#_180_Plt#_2	AG	CG	GG	GG	AG	AC	AA	GG	AG	AA	AG	AG	X_X	X_X
3._RUQ_56	_	CG	_	_	AG	_	_	_	_	_	_	AG	X_X	X_X
4._RUQ_56	AG	CG	CC	_	_	_	_	_	_	_	CT	_	X_X	X_X
5._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
6._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
7._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
8._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
9._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
10._RUQ_56	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
11._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
12._GC-08-080-2-03	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
13._GC-08-080-2-03	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
14._GC-08-080-2-03	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
15._GC-08-080-2-03	AA	CG	CC	CC	AG	AC	TT	GG	CT	AA	CT	AG	X_X	X_X
16._UF_676	_	CG	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X
17._RUQ_56	_	CG	CC	_	-	AC	_	_	_	_	_	AG	X_X	X_X

Input profile: UF_676 RUQ_56

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._UF_676 MITC-000064

identical
82 shared markers

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USDA-SHRS, United States of America

2._UF_676 UF_676_Fld#_180_Plt#_2

identical
82 shared markers

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USDA-TARS, United States of America

Location: Field: 180, Tree: 2

3._UF_676 RUQ_56

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._UF_676 RUQ_56

63.6 %
22 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

5._UF_676

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 7 > FP

Dapeng Zhang, 2016

6._UF_676

57.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 5 > FP

Dapeng Zhang, 2016

7._UF_676

57.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 4 > FP

Dapeng Zhang, 2016

8._UF_676

57.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 3 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._UF_676

57.1 %
35 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

10._UF_676 RUQ_56

57.1 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._UF_676

57.1 %
35 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0245

Dapeng Zhang, 2016

12._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

13._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

14._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

15._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

16._UF_676

55.7 %
35 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 293 I-043

Dapeng Zhang, 2016

17._UF_676 RUQ_56

54.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998